Neuroscience Codebase

Computational Neural Projects

A curated collection of neural data analysis tools, BCI implementations, and computational models built for scientific rigor.

Showing 6 of 6 repositories
Neural spike waveform clustering visualization
Neuroscience
Featured
Real-time Spike Sorting Engine
High-throughput neural spike detection and sorting pipeline for multi-electrode array recordings.
Methodology

Wavelet-based feature extraction with K-means clustering optimized for low-latency GPU processing.

Sorting Accuracy98.2%
Python • CUDA • PyTorch • NumPy
EEG signal classification heatmap for motor imagery
BCI Systems
Featured
Motor Imagery BCI Decoder
Deep learning decoder for EEG-based motor imagery classification in real-time BCI applications.
Methodology

EEGNet architecture utilizing temporal and spatial convolutions for robust signal classification.

Decoding F10.91
PyTorch • MNE-Python • Scikit-learn
Neural data processing pipeline architecture
Neural Data
Neural Data Pipeline
Scalable ETL framework for processing massive electrophysiology datasets with NWB compliance.
Methodology

Dask-based parallel processing for multi-channel LFP data with automated metadata extraction.

Data Throughput2GB/s
Dask • NWB • HDF5 • Docker
Cortical circuit connectivity graph simulation
Modeling
Cortical Circuit Simulator
Biophysically realistic simulation of cortical microcircuits using integrate-and-fire neuron models.
Methodology

NEURON-based simulation engine with custom synaptic plasticity rules and network topology.

Sim Speedup12x
NEURON • Python • MPI • C++
Visual stimulus reconstruction from neural activity
Neuroscience
Visual Cortex Decoder
Reconstruction of visual stimuli from primary visual cortex neural activity patterns.
Methodology

Variational Autoencoder (VAE) mapping latent neural representations to visual feature space.

Recon PSNR28.4dB
PyTorch • VAE • OpenCV • Matplotlib
Synaptic weight distribution over time
Modeling
Synaptic Plasticity Model
Computational model of STDP mechanisms in recurrent neural networks for memory formation.
Methodology

Implementation of triplet-based STDP rules in a spiking neural network framework.

Learning Rate0.001
Brian2 • Python • PyTorch • Git

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Development Workflow

A rigorous framework for computational precision.

Every project follows a structured, scientific progression designed to ensure code reliability, algorithmic efficiency, and reproducible research outcomes.

01Phase 01

Neural Data Audit

Rigorous assessment of raw electrophysiology datasets and signal-to-noise ratios to define the computational scope.

Key Deliverables

  • Signal Quality Analysis
  • Data Pipeline Assessment
  • Model Feasibility Report
02Phase 02

Algorithm Architecture

Designing custom neural network topologies and signal processing chains optimized for low-latency performance.

Key Deliverables

  • Neural Topology Design
  • Latency Optimization Plan
  • Computational Model Specs
03Phase 03

Implementation & Testing

Developing modular codebases with strict unit testing against public neuroimaging benchmarks and standards.

Key Deliverables

  • Modular Codebase Build
  • Benchmark Validation Suite
  • Automated Test Coverage
04Phase 04

Deployment & Monitoring

Containerized deployment with continuous telemetry tracking to ensure stability and scientific accuracy.

Key Deliverables

  • Containerized Deployment
  • Telemetry Dashboard Setup
  • Performance Monitoring

Open to research collaborations and technical consulting engagements.

NEURAL LIVEv2.4.0

Computational neuroscience research and neural interface development.

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